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COPASI

COPASI is an open-source software application for creating and solving mathematical models of biological processes such as metabolic networks, cell… (More)
Wikipedia

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Topic mentions per year

1993-2017
024619932017

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10 relations
Berkeley MadonnaC++GenoCADMetabolic control analysis
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Broader (1)

Systems biology

Related mentions per year

Related mentions per year

1941-2018
19401960198020002020
COPASI
C++
Microsoft Windows
Systems biology
SBML
macOS

Papers overview

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2012
2012
Easy parameter identifiability analysis with COPASI
BACKGROUND AND SCOPE Differential equation systems modeling biochemical reaction networks can only give quantitative predictions… (More)
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2012
2012
Condor-COPASI: high-throughput computing for biochemical networks
Mathematical modelling has become a standard technique to improve our understanding of complex biological systems. As models… (More)
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2009
2009
KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks
With the sequence of many genomes now available the major challenge of functional genomics is 'reassembling the pieces'. One… (More)
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Highly Cited
2006
Highly Cited
2006
COPASI - a COmplex PAthway SImulator
MOTIVATION Simulation and modeling is becoming a standard approach to understand complex biochemical processes. Therefore, there… (More)
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2006
2006
From Syntax to Semantics in Systems Biology Towards Automated Reasoning Tools
Mathematical biology has for a long time investigated the dynamics of biomolecular systems by developing numerical models… (More)
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2006
2006
An integrated model of glucose and galactose metabolism regulated by the GAL genetic switch
Glucose and galactose are two alternative carbon sources in yeast for energy production, producing CO2 and alcohol. The yeast… (More)
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2004
2004
Cell modeling using agent-based formalisms
The systems biology community is building increasingly complex models and simulations of cells and other biological entities… (More)
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Highly Cited
2003
Highly Cited
2003
Artificial gene networks for objective comparison of analysis algorithms
MOTIVATION Large-scale gene expression profiling generates data sets that are rich in observed features but poor in numbers of… (More)
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Highly Cited
1998
Highly Cited
1998
Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation
MOTIVATION The simulation of biochemical kinetic systems is a powerful approach that can be used for: (i) checking the… (More)
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Highly Cited
1993
Highly Cited
1993
GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems
GEPASI is a software system for modelling chemical and biochemical reaction networks on computers running Microsoft Windows. For… (More)
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