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COPASI

COPASI is an open-source software application for creating and solving mathematical models of biological processes such as metabolic networks, cell… Expand
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Berkeley MadonnaC++GenoCADMetabolic control analysis
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Broader (1)

Systems biology

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2014
2014
Early plant growth promotion of maize by various sulfur oxidizing bacteria that uses different thiosulfate oxidation pathway
The objective of the work was to evaluate the plant growth promotion of maize by thiosulfate-oxidizing bacteria possessing the… Expand
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2010
2010
13C Discrimination: A Stable Isotope Method to Quantify Root Interactions between C3 Rice (Oryza sativa) and C4 Barnyardgrass (Echinochloa crus-galli) in Flooded Fields
Abstract Assessing belowground plant competition is complex because it is very difficult to separate weed and crop roots from… Expand
2006
2006
From Syntax to Semantics in Systems Biology Towards Automated Reasoning Tools
  • F. Fages
  • Trans. Comp. Sys. Biology
  • 2006
    • Corpus ID: 740483
Mathematical biology has for a long time investigated the dynamics of biomolecular systems by developing numerical models… Expand
Highly Cited
2006
Highly Cited
2006
Systems biology COPASI — a COmplex PAthway SImulator
Motivation:Simulationandmodeling is becomingastandardapproach to understandcomplexbiochemical processes. Therefore, there is abig… Expand
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2006
2006
Kinetic Modelling with the Systems Biology Modelling Environment SyBME
Kinetic modelling and simulation is an important approach in systems biology. While the focus of current modelling tools is on… Expand
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2006
2006
Comparison of automated parameter estimation methods for neuronal signaling networks
This work is a suitability study of the different optimization methods for automated parameter estimation (fitting) in the… Expand
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Highly Cited
2005
Highly Cited
2005
Toric ideals and graph theory to analyze Hopf bifurcations in mass action systems
A family of polynomial differential systems describing the behavior of a chemical reaction network with generalized mass action… Expand
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Highly Cited
2005
Highly Cited
2005
Structural Basis for the EBA-175 Erythrocyte Invasion Pathway of the Malaria Parasite Plasmodium falciparum
(Cell 122, 183–193; July 29, 2005) Due to a copyediting error, the following conflict of interest statement was omitted from the… Expand
2002
2002
10 Computational Cell Biology - The Stochastic Approach
In broad terms, the current interest in " computational cell biology " reflects the contemporary fascination with electronic… Expand
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1999
1999
Algorithms for choosing differential gene expression experiments
Understanding biological systems at the level of genes and proteins is a major challenge. In this paper we represent the… Expand
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