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COPASI

COPASI is an open-source software application for creating and solving mathematical models of biological processes such as metabolic networks, cell… 
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Related topics

Related topics

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Berkeley MadonnaC++GenoCADMetabolic control analysis

Broader (1)

Systems biology

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2014
2014
Early plant growth promotion of maize by various sulfur oxidizing bacteria that uses different thiosulfate oxidation pathway
The objective of the work was to evaluate the plant growth promotion of maize by thiosulfate-oxidizing bacteria possessing the… 
2010
2010
13C Discrimination: A Stable Isotope Method to Quantify Root Interactions between C3 Rice (Oryza sativa) and C4 Barnyardgrass (Echinochloa crus-galli) in Flooded Fields
Abstract Assessing belowground plant competition is complex because it is very difficult to separate weed and crop roots from… 
Highly Cited
2006
Highly Cited
2006
Systems biology COPASI — a COmplex PAthway SImulator
Motivation:Simulationandmodeling is becomingastandardapproach to understandcomplexbiochemical processes. Therefore, there is abig… 
2006
2006
From Syntax to Semantics in Systems Biology Towards Automated Reasoning Tools
  • F. Fages
  • Trans. Comp. Sys. Biology
  • 2006
  • Corpus ID: 740483
Mathematical biology has for a long time investigated the dynamics of biomolecular systems by developing numerical models… 
Highly Cited
2005
Highly Cited
2005
Toric ideals and graph theory to analyze Hopf bifurcations in mass action systems
Review
2005
Review
2005
In vitro activation of CPP 32 and Mch 3 by Mch 4 , a novel human apoptotic cysteine protease containing two FADD-like domains ( granzyme B / Mch 2 / protease cascade / FAS / APO-I-receptor )
Emerging evidence suggests that an amplifiable protease cascade consisting of multiple aspartatespecific cysteine proteases… 
2004
2004
Cell modeling using agent-based formalisms
The systems biology community is building increasingly complex models and simulations of cells and other biological entities… 
Review
2003
Review
2003
Characterization of New Mutants in the Early Part of the Yeast Secretory Pathway Isolated by a [ 3 H ] Mannose Suicide Selection
We have adapted a [3H]mannose suicide selection to identify mutations in additional genes which function in the early part of the… 
2002
2002
10 Computational Cell Biology - The Stochastic Approach
In broad terms, the current interest in " computational cell biology " reflects the contemporary fascination with electronic… 
1999
1999
Algorithms for choosing differential gene expression experiments
Understanding biological systems at the level of genes and proteins is a major challenge. In this paper we represent the… 
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