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COPASI

COPASI is an open-source software application for creating and solving mathematical models of biological processes such as metabolic networks, cell… Expand
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Berkeley MadonnaC++GenoCADMetabolic control analysis
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Broader (1)

Systems biology

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2012
2012
Impact of Yeast Glycosylation Pathway on Cell Integrity and Morphology
In the N-glycosylation reactions catalysed by the Alg enzymes, dolichyl phosphate (DolP) serves as a lipid acceptor of sugar… Expand
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2010
2010
13C Discrimination: A Stable Isotope Method to Quantify Root Interactions between C3 Rice (Oryza sativa) and C4 Barnyardgrass (Echinochloa crus-galli) in Flooded Fields
Abstract Assessing belowground plant competition is complex because it is very difficult to separate weed and crop roots from… Expand
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2009
2009
KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks
With the sequence of many genomes now available the major challenge of functional genomics is 'reassembling the pieces'. One… Expand
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Highly Cited
2006
Highly Cited
2006
Systems biology COPASI — a COmplex PAthway SImulator
Motivation:Simulationandmodeling is becomingastandardapproach to understandcomplexbiochemical processes. Therefore, there is abig… Expand
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2006
2006
Kinetic Modelling with the Systems Biology Modelling Environment SyBME
Summary Kinetic modelling and simulation is an important approach in systems biology. While the focus of current modelling tools… Expand
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Highly Cited
2005
Highly Cited
2005
Structural Basis for the EBA-175 Erythrocyte Invasion Pathway of the Malaria Parasite Plasmodium falciparum
(Cell 122, 183–193; July 29, 2005) Due to a copyediting error, the following conflict of interest statement was omitted from the… Expand
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2004
2004
Cell modeling using agent-based formalisms
The systems biology community is building increasingly complex models and simulations of cells and other biological entities… Expand
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2002
2002
10 Computational Cell Biology - The Stochastic Approach
In broad terms, the current interest in " computational cell biology " reflects the contemporary fascination with electronic… Expand
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2002
2002
XML Pathway File Conversion between Genomic Object Net and SBML
Recently, the importance of biosimulation softwares in systems biology has been emphasized and received considerable attentions… Expand
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1999
1999
Algorithms for choosing differential gene expression experiments
Understanding biological systems at the level of genes and proteins is a major challenge. In this paper we represent the… Expand
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