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Phylogenetic Analysis

Known as: Phylogenetics 
Phylogenetic analysis is the study of evolutionary relationships among the many different kinds of life on earth, both living (extant) and dead… 
National Institutes of Health

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
Highly Cited
2018
Highly Cited
2018
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Abstract Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary… 
Highly Cited
2017
Highly Cited
2017
ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates
Model-based molecular phylogenetics plays an important role in comparisons of genomic data, and model selection is a key step in… 
Highly Cited
2013
Highly Cited
2013
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Background The analysis of microbial communities through DNA sequencing brings many challenges: the integration of different… 
Highly Cited
2013
Highly Cited
2013
MITOS: improved de novo metazoan mitochondrial genome annotation.
Highly Cited
2012
Highly Cited
2012
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Computational evolutionary biology, statistical phylogenetics and coalescent-based population genetics are becoming increasingly… 
Highly Cited
2012
Highly Cited
2012
Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses.
In phylogenetic analyses of molecular sequence data, partitioning involves estimating independent models of molecular evolution… 
Highly Cited
2008
Highly Cited
2008
An improved general amino acid replacement matrix.
Amino acid replacement matrices are an essential basis of protein phylogenetics. They are used to compute substitution… 
Highly Cited
2007
Highly Cited
2007
BEAST: Bayesian evolutionary analysis by sampling trees
BackgroundThe evolutionary analysis of molecular sequence variation is a statistical enterprise. This is reflected in the… 
Highly Cited
2006
Highly Cited
2006
Relaxed Phylogenetics and Dating with Confidence
In phylogenetics, the unrooted model of phylogeny and the strict molecular clock model are two extremes of a continuum. Despite… 
Review
2004
Review
2004
Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests.
Model selection is a topic of special relevance in molecular phylogenetics that affects many, if not all, stages of phylogenetic… 
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