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Phylogenetic Analysis

Known as: Phylogenetics 
Phylogenetic analysis is the study of evolutionary relationships among the many different kinds of life on earth, both living (extant) and dead… Expand
National Institutes of Health

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
Review
2019
Review
2019
BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics
Abstract BEAGLE is a high-performance likelihood-calculation library for phylogenetic inference. The BEAGLE library defines a… Expand
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Review
2018
Review
2018
Tracking virus outbreaks in the twenty-first century
Emerging viruses have the potential to impose substantial mortality, morbidity and economic burdens on human populations… Expand
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Highly Cited
2017
Highly Cited
2017
ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates
Model-based molecular phylogenetics plays an important role in comparisons of genomic data, and model selection is a key step in… Expand
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Highly Cited
2013
Highly Cited
2013
MITOS: improved de novo metazoan mitochondrial genome annotation.
About 2000 completely sequenced mitochondrial genomes are available from the NCBI RefSeq data base together with manually curated… Expand
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Highly Cited
2012
Highly Cited
2012
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Computational evolutionary biology, statistical phylogenetics and coalescent-based population genetics are becoming increasingly… Expand
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Highly Cited
2012
Highly Cited
2012
Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses.
In phylogenetic analyses of molecular sequence data, partitioning involves estimating independent models of molecular evolution… Expand
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Highly Cited
2008
Highly Cited
2008
An improved general amino acid replacement matrix.
Amino acid replacement matrices are an essential basis of protein phylogenetics. They are used to compute substitution… Expand
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Highly Cited
2007
Highly Cited
2007
BEAST: Bayesian evolutionary analysis by sampling trees
BackgroundThe evolutionary analysis of molecular sequence variation is a statistical enterprise. This is reflected in the… Expand
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Highly Cited
2006
Highly Cited
2006
Relaxed Phylogenetics and Dating with Confidence
In phylogenetics, the unrooted model of phylogeny and the strict molecular clock model are two extremes of a continuum. Despite… Expand
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Highly Cited
2004
Highly Cited
2004
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics
BackgroundMost analysis programs for inferring molecular phylogenies are difficult to use, in particular for researchers with… Expand
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