Nanoscale Molecular Dynamics

Nanoscale Molecular Dynamics (NAMD, formerly Not Another Molecular Dynamics Program) is computer software for molecular dynamics simulation, written… (More)
Wikipedia

Topic mentions per year

Topic mentions per year

1996-2018
05101519962018

Papers overview

Semantic Scholar uses AI to extract papers important to this topic.
2012
2012
SUMMARY MDWeb and MDMoby constitute a web-based platform to help access to molecular dynamics (MD) in the standard and high… (More)
Is this relevant?
2011
2011
A 100-million-atom biomolecular simulation with NAMD is one of the three benchmarks for the NSF-funded sustainable petascale… (More)
  • figure 1
  • figure 2
  • table 1
  • figure 3
  • table 2
Is this relevant?
2010
2010
Heterogeneous parallel systems using GPU devices for application acceleration have garnered significant attention in the… (More)
  • figure 1
  • table 1
  • figure 2
  • figure 3
  • figure 4
Is this relevant?
2008
2008
The fastest supercomputers today such as Blue Gene/L, Blue Gene/P, Cray XT3 and XT4 are connected by a three-dimensional torus… (More)
  • figure 1
  • table 1
  • figure 2
  • table 2
  • figure 3
Is this relevant?
Highly Cited
2008
Highly Cited
2008
Graphics processing units (GPUs) have become an attractive option for accelerating scientific computations as a result of… (More)
Is this relevant?
2008
2008
Performance analysis tools based on event tracing are important for understanding the complex computational activities and… (More)
  • table 1
  • figure 1
  • table 2
  • figure 3
  • figure 2
Is this relevant?
Highly Cited
2005
Highly Cited
2005
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to… (More)
  • figure 1
  • figure 2
  • figure 3
  • figure 4
  • figure 5
Is this relevant?
Highly Cited
2005
Highly Cited
2005
Parallel machines with an extremely large number of processors (at least tens of thousands processors) are now in operation. For… (More)
  • figure 1.1
  • figure 2.1
  • figure 3.1
  • table 3.1
  • table 3.2
Is this relevant?
Highly Cited
1998
Highly Cited
1998
Molecular dynamics programs simulate the behavior of biomolecular systems, leading to understanding of their functions. However… (More)
  • table I
  • figure 1
  • figure 2
  • figure 4
  • figure 5
Is this relevant?
Highly Cited
1996
Highly Cited
1996
2 Summary NAMD is a molecular dynamics program designed for high performance simulations of large biomolecular systems on… (More)
  • table 1
  • table 2
  • table 3
  • figure 1
  • figure 2
Is this relevant?