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Nanoscale Molecular Dynamics

Nanoscale Molecular Dynamics (NAMD, formerly Not Another Molecular Dynamics Program) is computer software for molecular dynamics simulation, written… 
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Papers overview

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Highly Cited
2014
Highly Cited
2014
Highly Cited
2014
Highly Cited
2014
Methane hydrates are crystalline structures composed of cages of hydrogen-bonded water molecules in which methane molecules are… 
2012
2012
Power dissipation and energy consumption are becoming increasingly important architectural design constraints in different types… 
Highly Cited
2010
Highly Cited
2010
Large parallel machines with hundreds of thousands of processors are being built. Recent studies have shown that ensuring good… 
Highly Cited
2009
2008
2008
Computer clusters are a very cost-effective approach for high performance computing, but simulating a complete cluster is still… 
2008
2008
  • A. Bhatele, L. Kalé
  • IEEE International Symposium on Parallel and…
  • 2008
  • Corpus ID: 10710908
The fastest supercomputers today such as Blue Gene/L and XT3 are connected by a 3-dimensional torus/mesh interconnect… 
Highly Cited
2007
Highly Cited
2007
Multi-core processors are growing as a new industry trend as single core processors rapidly reach the physical limits of possible… 
Highly Cited
1999
Highly Cited
1999
Abstract Molecular dynamics programs simulate the behavior of biomolecular systems, leading to understanding of their functions… 
Highly Cited
1996
Highly Cited
1996
NAMD is a molecular dynamics program designed for high performance simulations of large biomolecular systems on parallel…