tacg – a grep for DNA

Abstract

Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly over increasingly long sequences, thus codes must be efficient and insensitive to sequence length. Such patterns of interest include simple motifs with IUPAC degeneracies, regular expressions… (More)
DOI: 10.1186/1471-2105-3-8

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Cite this paper

@inproceedings{Mangalam2001tacgA, title={tacg – a grep for DNA}, author={Harry Mangalam}, booktitle={BMC Bioinformatics}, year={2001} }