pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows


RNA pseudoknots are an important structural feature of RNAs, but often neglected in computer predictions for reasons of efficiency. Here, we present the pknotsRG Web Server for single sequence RNA secondary structure prediction including pseudoknots. pknotsRG employs the newest Turner energy rules for finding the structure of minimal free energy. The… (More)
DOI: 10.1093/nar/gkm258


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