obitools: a unix‐inspired software package for DNA metabarcoding

@article{Boyer2016obitoolsAU,
  title={obitools: a unix‐inspired software package for DNA metabarcoding},
  author={F. Boyer and C. Mercier and A. Bonin and Y. Le bras and P. Taberlet and E. Coissac},
  journal={Molecular Ecology Resources},
  year={2016},
  volume={16}
}
DNA metabarcoding offers new perspectives in biodiversity research. This recently developed approach to ecosystem study relies heavily on the use of next‐generation sequencing (NGS) and thus calls upon the ability to deal with huge sequence data sets. The obitools package satisfies this requirement thanks to a set of programs specifically designed for analysing NGS data in a DNA metabarcoding context. Their capacity to filter and edit sequences while taking into account taxonomic annotation… Expand
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