ndexr - an R package to interface with the network data exchange

@article{Auer2018ndexrA,
  title={ndexr - an R package to interface with the network data exchange},
  author={Florian Auer and Zaynab Hammoud and Alexandr Ishkin and Dexter Pratt and Trey Ideker and Frank Kramer},
  journal={Bioinformatics},
  year={2018},
  volume={34 4},
  pages={
          716-717
        }
}
Motivation Seamless exchange of biological network data enables bioinformatic algorithms to integrate networks as prior knowledge input as well as to document resulting network output. However, the interoperability between pathway databases and various methods and platforms for analysis is currently lacking. The Network Data Exchange (NDEx) is an open-source data commons that facilitates the user-centered sharing and publication of networks of many types and formats. Results Here, we present… CONTINUE READING
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