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SHOWING 1-3 OF 3 REFERENCES
The HUPO proteomics standards initiative - easing communication and minimizing data loss in a changing world
- Computer Science, MedicineBriefings Bioinform.
The Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) was tasked with the creation of data standards and interchange formats to allow both the exchange and storage of such data irrespective of the hardware and software from which it was generated.
A common open representation of mass spectrometry data and its application to proteomics research
- Computer Science, MedicineNature Biotechnology
The 'mzXML' format is introduced, an open, generic XML (extensible markup language) representation of MS data that will facilitate data management, interpretation and dissemination in proteomics research.
Corrigendum: Phenotypic alteration of eukaryotic cells using randomized libraries of artificial transcription factors
- BiologyNature Biotechnology
In the author list, the name of author Seong-il Lee was misspelled as Sung-Il Lee.