mpscan: Fast Localisation of Multiple Reads in Genomes

@inproceedings{Rivals2009mpscanFL,
  title={mpscan: Fast Localisation of Multiple Reads in Genomes},
  author={Eric Rivals and Leena Salmela and Petteri Kiiskinen and Petri Kalsi and Jorma Tarhio},
  booktitle={WABI},
  year={2009}
}
With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference genome. The upcoming versions of these sequencers promise even higher sequencing capacities; this may turn the read mapping task into a bottleneck for which alternative pattern matching approaches must be experimented. We present an algorithm and its implementation, called mpscan, which uses a sophisticated filtration scheme to… CONTINUE READING

From This Paper

Figures, tables, results, connections, and topics extracted from this paper.
15 Extracted Citations
27 Extracted References
Similar Papers

Citing Papers

Publications influenced by this paper.
Showing 1-10 of 15 extracted citations

Referenced Papers

Publications referenced by this paper.
Showing 1-10 of 27 references

Similar Papers

Loading similar papers…