miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data

@inproceedings{An2013miRDeepAI,
  title={miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data},
  author={Jiyuan An and John K. Lai and Melanie L. Lehman and Colleen C. Nelson},
  booktitle={Nucleic acids research},
  year={2013}
}
miRDeep and its varieties are widely used to quantify known and novel micro RNA (miRNA) from small RNA sequencing (RNAseq). This article describes miRDeep*, our integrated miRNA identification tool, which is modeled off miRDeep, but the precision of detecting novel miRNAs is improved by introducing new strategies to identify precursor miRNAs. miRDeep* has a user-friendly graphic interface and accepts raw data in FastQ and Sequence Alignment Map (SAM) or the binary equivalent (BAM) format. Known… CONTINUE READING
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