htSeqTools: high-throughput sequencing quality control, processing and visualization in R

@article{Planet2012htSeqToolsHS,
  title={htSeqTools: high-throughput sequencing quality control, processing and visualization in R},
  author={Evarist Planet and Camille Stephan-Otto Attolini and Oscar Reina and Oscar Flores and David Rossell},
  journal={Bioinformatics},
  year={2012},
  volume={28 4},
  pages={589-90}
}
UNLABELLED We provide a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists. AVAILABILITY www.bioconductor.org. 
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