compomics-utilities: an open-source Java library for computational proteomics

  title={compomics-utilities: an open-source Java library for computational proteomics},
  author={Harald Barsnes and Marc Vaudel and Niklaas Colaert and Kenny Helsens and Albert Sickmann and Frode S. Berven and Lennart Martens},
  booktitle={BMC Bioinformatics},
The growing interest in the field of proteomics has increased the demand for software tools and applications that process and analyze the resulting data. And even though the purpose of these tools can vary significantly, they usually share a basic set of features, including the handling of protein and peptide sequences, the visualization of (and interaction with) spectra and chromatograms, and the parsing of results from various proteomics search engines. Developers typically spend considerable… CONTINUE READING

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Publications referenced by this paper.
Showing 1-10 of 19 references

Open mass spectrometry search algorithm.

Journal of proteome research • 2004
View 7 Excerpts
Highly Influenced

mzML—a Community Standard for Mass Spectrometry Data*

Molecular & cellular proteomics : MCP • 2011
View 1 Excerpt

ms_lims, a simple yet powerful open source LIMS for mass spectrometry-driven proteomics

K Helsens, N Colaert, +9 authors L Martens
Proteomics • 2010
View 1 Excerpt

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