Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene e based approaches

@inproceedings{Schrch2018WholeGS,
  title={Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene e based approaches},
  author={Anita Christina Sch{\"u}rch and Sergio Arredondo-Alonso and Rob Gerard Jan Willems and Richard Vernon Goering},
  year={2018}
}
Background: Whole genome sequence (WGS)-based strain typing finds increasing use in the epidemiologic analysis of bacterial pathogens in both public health as well as more localized infection control 

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