Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads

@article{Gouin2015WholegenomeRO,
  title={Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads},
  author={Anais Gouin and Fabrice Legeai and Pierre Nouhaud and Annabel Whibley and J. C. Simon and Claire Lemaitre},
  journal={Heredity},
  year={2015},
  volume={114},
  pages={494-501}
}
Unmapped reads are often discarded from the analysis of whole-genome re-sequencing, but new biological information and insights can be uncovered through their analysis. In this paper, we investigate unmapped reads from the re-sequencing data of 33 pea aphid genomes from individuals specialized on different host plants. The unmapped reads for each individual… CONTINUE READING

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