WITHDRAWN: Evaluation of next-generation sequencing software in mapping and assembly.

  title={WITHDRAWN: Evaluation of next-generation sequencing software in mapping and assembly.},
  author={Suying Bao and Rui Jiang and Wingkeung Kwan and Binbin Wang and Xu Ma and You-Qiang Song},
  journal={Journal of human genetics},
Next-generation high-throughput DNA sequencing technologies have advanced progressively in sequence-based genomic research and novel biological applications with the promise of sequencing DNA at unprecedented speed. These new non-Sanger-based technologies feature several advantages, when compared with traditional sequencing methods in terms of higher sequencing speed, lower per run cost and higher accuracy. However, reads from next-generation sequencing (NGS) platforms, such as 454/Roche, ABI… 


Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing
A broad overview of bioinformatics approaches that have been introduced for several genomics and functional genomics applications of next-generation sequencing is provided.
Next-generation DNA sequencing methods.
  • E. Mardis
  • Biology
    Annual review of genomics and human genetics
  • 2008
An astounding potential exists for next-generation DNA sequencing technologies to bring enormous change in genetic and biological research and to enhance the authors' fundamental biological knowledge.
De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
This study proposes a de novo assembler software that generates a set of accurate contigs of several kilobases that cover most of the bacterial genome on the Illumina sequencing platform that produces millions of very short sequences that are 35 bases in length.
Computational methods for discovering structural variation with next-generation sequencing
A new generation of methods are being developed to tackle the challenges of short reads, while taking advantage of the high coverage the new sequencing technologies provide.
Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry
An approach that generates several billion bases of accurate nucleotide sequence per experiment at low cost is reported, effective for accurate, rapid and economical whole-genome re-sequencing and many other biomedical applications.
SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
The SHARCGS algorithm is a suitable tool for fully exploiting novel sequencing technologies by assembling sequence contigs de novo with high confidence and by outperforming existing assembly algorithms in terms of speed and accuracy.
Advantages of next-generation sequencing versus the microarray in epigenetic research.
It is inevitable that massively-parallel sequencing platforms will supercede the microarray for many applications, however, there are niches for microarrays to fill and interestingly the authors may very well witness a symbiotic relationship between microarray and high-throughput sequencing in the future.