WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark.

@article{Roer2017WGSbasedSO,
  title={WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark.},
  author={Louise Roer and Frank Hansen and Martin Christen Fr{\o}lund Thomsen and Jenny Dahl Knudsen and D. S. Hansen and Mikala Wang and Jurgita Samulionien{\'e} and Ulrik Stenz Justesen and Bent L{\o}we R{\o}der and Helga Schumacher and Claus M. {\O}stergaard and Leif Percival Andersen and Esad Dzajic and Turid Snekloth S{\o}ndergaard and Marc Stegger and Anette Marie Hammerum and Henrik Hasman},
  journal={The Journal of antimicrobial chemotherapy},
  year={2017},
  volume={72 7},
  pages={
          1922-1929
        }
}
Objectives To evaluate a genome-based surveillance of all Danish third-generation cephalosporin-resistant Escherichia coli (3GC-R Ec ) from bloodstream infections between 2014 and 2015, focusing on horizontally transferable resistance mechanisms. Methods A collection of 552 3GC-R Ec isolates were whole-genome sequenced and characterized by using the batch uploader from the Center for Genomic Epidemiology (CGE) and automatically analysed using the CGE tools according to resistance profile… CONTINUE READING
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