Visualization of DNA/RNA Structure using Temporal CGRs

@article{Dunham2006VisualizationOD,
  title={Visualization of DNA/RNA Structure using Temporal CGRs},
  author={Margaret H. Dunham and Donya Quick and Yuhang Wang and Monnie McGee and Jim Waddle},
  journal={Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06)},
  year={2006},
  pages={171-178}
}
  • Margaret H. Dunham, Donya Quick, +2 authors Jim Waddle
  • Published in
    Sixth IEEE Symposium on…
    2006
  • Computer Science
  • We present a new DNA/RNA sequence visualization technique, Temporal Chaos Game Representation (TCGR), which is an extension of Frequency Chaos Game Representation (FCGR). Unlike earlier CGR variants, TCGR illustrates the distribution of nucleotide sub-patterns at different positions within a sequence, and it can be applied to sets of sequences as well as individual sequences. TCGRs are suitable for short or long sequences. Preliminary experiments examining patterns of nucleotide occurrences in… CONTINUE READING

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