Using the Velvet de novo assembler for short-read sequencing technologies.

@article{Zerbino2010UsingTV,
  title={Using the Velvet de novo assembler for short-read sequencing technologies.},
  author={Daniel R. Zerbino},
  journal={Current protocols in bioinformatics},
  year={2010},
  volume={Chapter 11},
  pages={Unit 11.5}
}
The Velvet de novo assembler was designed to build contigs and eventually scaffolds from short-read sequencing data. This protocol describes how to use Velvet, interpret its output, and tune its parameters for optimal results. It also covers practical issues such as configuration, using the VelvetOptimiser routine, and processing colorspace data. 
Highly Influential
This paper has highly influenced 39 other papers. REVIEW HIGHLY INFLUENTIAL CITATIONS
Recent Discussions
This paper has been referenced on Twitter 1 time over the past 90 days. VIEW TWEETS

From This Paper

Figures and tables from this paper.
205 Citations
9 References
Similar Papers

Citations

Publications citing this paper.
Showing 1-10 of 205 extracted citations

References

Publications referenced by this paper.
Showing 1-9 of 9 references

A new method to compute K - mer frequencies and its application to annotate large repetitive plant genomes

  • P. A. Pevzner, H. Tang, M. S. Waterman
  • BMC Genomics
  • 2001
3 Excerpts

Similar Papers

Loading similar papers…