Using Biological Pathway Data with Paxtools

@inproceedings{Demir2013UsingBP,
  title={Using Biological Pathway Data with Paxtools},
  author={Emek Demir and Ozgun Babur and Igor Rodchenkov and B{\"u}lent Arman Aksoy and Ken I. Fukuda and Benjamin E. Gross and Selçuk Onur S{\"u}mer and Gary D. Bader and Chris Sander},
  booktitle={PLoS Computational Biology},
  year={2013}
}
A rapidly growing corpus of formal, computable pathway information can be used to answer important biological questions including finding non-trivial connections between cellular processes, identifying significantly altered portions of the cellular network in a disease state and building predictive models that can be used for precision medicine. Due to its complexity and fragmented nature, however, working with pathway data is still difficult. We present Paxtools, a Java library that contains… CONTINUE READING

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