Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates.

@article{Gill2016UnderstandingPP,
  title={Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates.},
  author={M. Gill and P. Lemey and S. Bennett and R. Biek and M. Suchard},
  journal={Systematic biology},
  year={2016},
  volume={65 6},
  pages={
          1041-1056
        }
}
  • M. Gill, P. Lemey, +2 authors M. Suchard
  • Published 2016
  • Computer Science, Mathematics, Biology, Medicine
  • Systematic biology
  • Effective population size characterizes the genetic variability in a population and is a parameter of paramount importance in population genetics and evolutionary biology. Kingman's coalescent process enables inference of past population dynamics directly from molecular sequence data, and researchers have developed a number of flexible coalescent-based models for Bayesian nonparametric estimation of the effective population size as a function of time. Major goals of demographic reconstruction… CONTINUE READING
    34 Citations

    Paper Mentions

    Estimating effective population size changes from preferentially sampled genetic sequences
    • 7
    • PDF
    Horseshoe-based bayesian nonparametric estimation of effective population size trajectories.
    • 11
    Modeling the Growth and Decline of Pathogen Effective Population Size Provides Insight into Epidemic Dynamics and Drivers of Antimicrobial Resistance
    • 17
    • Highly Influenced
    • PDF
    Bayesian Estimation of Past Population Dynamics in BEAST 1.10 Using the Skygrid Coalescent Model
    • 9
    • PDF
    Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction
    • 2
    • PDF

    References

    SHOWING 1-10 OF 74 REFERENCES
    Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies.
    • 43
    • PDF
    Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics.
    • 513
    • PDF
    Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci.
    • 280
    • PDF
    Bayesian inference of population size history from multiple loci
    • 568
    • Highly Influential
    Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo
    • 69
    • PDF
    Bayesian coalescent inference of past population dynamics from molecular sequences.
    • 2,389
    • Highly Influential
    • PDF
    Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data.
    • 869
    • Highly Influential
    • PDF
    An integrated framework for the inference of viral population history from reconstructed genealogies.
    • 359
    • PDF
    Coalescents and genealogical structure under neutrality.
    • 377
    • PDF
    Skyline‐plot methods for estimating demographic history from nucleotide sequences
    • 345
    • PDF