TreeFam: 2008 Update

  title={TreeFam: 2008 Update},
  author={Jue Ruan and Heng Li and Zhongzhong Chen and Avril Coghlan and Lachlan James M. Coin and Yiran Guo and Jean-Karim H{\'e}rich{\'e} and Yafeng Hu and Karsten Kristiansen and Ruiqiang Li and Tao Liu and Alan Moses and Junjie Qin and S\oren Vang and Albert J. Vilella and Abel Ureta-Vidal and Lars Bolund and Jun Wang and Richard Durbin},
  booktitle={Nucleic Acids Research},
TreeFam ( was developed to provide curated phylogenetic trees for all animal gene families, as well as orthologue and paralogue assignments. Release 4.0 of TreeFam contains curated trees for 1314 families and automatically generated trees for another 14,351 families. We have expanded TreeFam to include 25 fully sequenced animal genomes, as well as four genomes from plant and fungal outgroup species. We have also introduced more accurate approaches for automatically… CONTINUE READING
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