Transcriptome sequencing to produce SNP-based genetic maps of onion

@article{Duangjit2013TranscriptomeST,
  title={Transcriptome sequencing to produce SNP-based genetic maps of onion},
  author={Janejira Duangjit and Borut Bohanec and Agnes P. Chan and Christopher D. Town and Michael J Havey},
  journal={Theoretical and Applied Genetics},
  year={2013},
  volume={126},
  pages={2093-2101}
}
We used the Roche-454 platform to sequence from normalized cDNA libraries from each of two inbred lines of onion (OH1 and 5225). From approximately 1.6 million reads from each inbred, 27,065 and 33,254 cDNA contigs were assembled from OH1 and 5225, respectively. In total, 3,364 well supported single nucleotide polymorphisms (SNPs) on 1,716 cDNA contigs were identified between these two inbreds. One SNP on each of 1,256 contigs was randomly selected for genotyping. OH1 and 5225 were crossed and… CONTINUE READING
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References

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Showing 1-10 of 32 references

Genetic diversity analysis and single-nucleotidepolymorphism marker development in cultivated bulb onion based on expressed sequence tag–simple sequence repeat markers

J McCallum, S Thomson, +3 authors MJ Havey
J Am Soc Hortic Sci • 2008
View 9 Excerpts
Highly Influenced

Nuclear DNA content of some important plant species

Plant Molecular Biology Reporter • 2007
View 2 Excerpts
Highly Influenced

Single nucleotide polymorphisms , indels , and simple sequence repeats for onion cultivar identification

J Jakše, W Martin, J McCallum, MJ Havey
J Am Soc Hortic Sci • 2005
View 9 Excerpts
Highly Influenced

Evaluation of gynogenic responsiveness of selfed doubled haploid onion lines , chromosome doubling procedure via somatic regeneration , and male fertility

M Jakše, P Hirschegger, B Bohanec, MJ Havey
J Am Soc Hortic Sci • 2010
View 2 Excerpts

Genetic analyses of soluble carbohydrate concentrations in onion bulbs

S Raines, C Henson, MJ Havey
J Am Soc Hortic Sci • 2009
View 2 Excerpts

Genetic fingerprinting of Indian onion cultivars using SSR markers

V Mahajan, J Jakše, MJ Havey, KE Lawande
Indian J Hortic • 2009
View 1 Excerpt

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