Transcriptome analysis identified aberrant gene expression in pollen developmental pathways leading to CGMS in cotton (Gossypium hirsutum L.)

@article{Hamid2019TranscriptomeAI,
  title={Transcriptome analysis identified aberrant gene expression in pollen developmental pathways leading to CGMS in cotton (Gossypium hirsutum L.)},
  author={Rasmieh Hamid and Hassan Marashi and Rukam Singh Tomar and Saeid Malekzadeh Shafaroudi and Pritesh H. Sabara},
  journal={PLoS ONE},
  year={2019},
  volume={14}
}
Male sterility (induced or natural) is a potential tool for commercial hybrid seed production in different crops. Despite numerous endeavors to understand the physiological, hereditary, and molecular cascade of events governing CMS in cotton, the exact biological process controlling sterility and fertility reconstruction remains obscure. During current study, RNA-Seq using Ion Torrent S5 platform is carried out to identify ‘molecular portraits’ in floral buds among the Cytoplasmic Genic Male… Expand
Transcriptome profiling and cataloging differential gene expression in floral buds of fertile and sterile lines of cotton (Gossypium hirsutum L.).
Cytoplasmic Male Sterility is maternally inherited trait in plants, characterized by failure to produce functional pollen during anther development. Anther development is modulated through theExpand
Uncloaking lncRNA-meditated gene expression as a potential regulator of CMS in cotton (Gossypium hirsutum L.).
TLDR
Functional analysis of the co-expression network of lncRNA-mRNA using gene ontology vouchsafes that, lncRNAs play a crucial role in cytoplasmic male sterility and fertility restoration through pollen development, INO80 complex, development of anther wall tapetum, chromatin remodeling, and histone modification. Expand
Genome-wide comparative transcriptome analysis of the A4-CMS line ICPA 2043 and its maintainer ICPB 2043 during the floral bud development of pigeonpea.
TLDR
The results were in strong agreement with the gene expression atlas of pigeonpea that implicated various candidate genes like sucrose-proton symporter 2 and an uncharacterized protein along with pectate lyase, pectinesterase inhibitors, L-ascorbate oxidase homolog, ATPase, β-galactosidase, polygalacturonase, and aldose 1-epimerase for pollen development of pigeonpec. Expand
MicroRNAs Involved in Regulatory Cytoplasmic Male Sterility by Analysis RNA-seq and Small RNA-seq in Soybean
TLDR
This study performed high-throughput sequencing and degradome analyses to identify microRNAs (miRNAs) and their targets in a soybean CMS line and its maintainer line, indicating that miRNAs might contribute to the soy bean CMS regulatory network by modulating the expression of CMS-related genes. Expand
Comparative RNA-Seq profiling of a resistant and susceptible peanut (Arachis hypogaea) genotypes in response to leaf rust infection caused by Puccinia arachidis
The goal of this study was to identify differentially expressed genes (DEGs) responsible for peanut plant (Arachis hypogaea) defence against Puccinia arachidis (causative agent of rust disease).Expand
Peanut (Arachis hypogaea) transcriptome revealed the molecular interactions of the defense mechanism in response to early leaf spot fungi (Cercospora arachidicola)
TLDR
Insight is provided into the understanding of molecular interactions between plant and pathogen, and will also help to generate molecular markers for genetic mapping of peanut. Expand

References

SHOWING 1-10 OF 81 REFERENCES
Transcriptome profiling and cataloging differential gene expression in floral buds of fertile and sterile lines of cotton (Gossypium hirsutum L.).
Cytoplasmic Male Sterility is maternally inherited trait in plants, characterized by failure to produce functional pollen during anther development. Anther development is modulated through theExpand
Transcriptome Analysis of Early Anther Development of Cotton Revealed Male Sterility Genes for Major Metabolic Pathways
TLDR
A digital gene expression analysis between an upland cotton GMS line and its maintainer line provides comprehensive gene expression information at the transcriptional level and lays the foundation for further functional analysis of candidate genes required for anther development, and will help understand the molecular mechanism of GMS in cotton. Expand
Transcriptome de novo assembly and analysis of differentially expressed genes related to cytoplasmic male sterility in cabbage.
TLDR
Identification of candidate genes that may be involved in male sterility in cabbage provides a comprehensive understanding of the mechanism underlying CMS in cabbage. Expand
Defective pollen wall contributes to male sterility in the male sterile line 1355A of cotton
TLDR
Insight is provided into the phenotypic characteristics and gene regulatory network of the genic male sterile line 1355A in upland cotton that is consistent with the RNA-seq data, and further gene expression studies implicated differences in fatty acids synthesis and metabolism. Expand
Comprehensive transcriptome-based characterization of differentially expressed genes involved in microsporogenesis of radish CMS line and its maintainer
TLDR
A comparative analysis of radish floral buds from a CMS line and its maintainer was conducted using next generation sequencing (NGS) technology, and several candidate genes encoding ATP synthase, auxin response factor, transcription factors, chalcone synthase (CHS), and male sterility (MS) were responsible for microsporogenesis. Expand
Transcriptome de novo assembly and differentially expressed genes related to cytoplasmic male sterility in kenaf (Hibiscus cannabinus L.)
TLDR
A comparative transcriptome analysis of kenaf anthers from a CMS line and its maintainer was conducted using Solexa sequencing to reveal the possible mechanism of Cytoplasmic male sterility, providing a comprehensive foundation for understanding anther development and the CMS mechanism in kanaf. Expand
Transcriptome Sequencing and De Novo Analysis of Cytoplasmic Male Sterility and Maintenance in JA-CMS Cotton
TLDR
Bioinformatics analysis revealed that genes involved in reduction-oxidation reactions and alpha-linolenic acid metabolism were down-regulated, while genes pertaining to photosynthesis and flavonoid biosynthesis were up-regulated in JA-CMS floral buds compared with their JB counterparts at the SS and/or MS stages. Expand
Transcriptome Sequencing Analyses between the Cytoplasmic Male Sterile Line and Its Maintainer Line in Welsh Onion (Allium fistulosum L.)
TLDR
It is demonstrated that the CMS regulatory genes and pathways may be associated with the mitochondria and nucleus in the Welsh onion. Expand
Genome-wide comparative transcriptome analysis of CMS-D2 and its maintainer and restorer lines in upland cotton
TLDR
Through genome-wide comparative transcriptome analysis, the differential expression profiles of CMS-D2 and its maintainer and restorer lines in Upland cotton were identified and provide an important foundation for further studies into the molecular mechanisms of the interactions between the restorer gene Rf1 and the CMS- D2 cytoplasm. Expand
Expression profiles of a cytoplasmic male sterile line of Gossypium harknessii and its fertility restorer and maintainer lines revealed by RNA-Seq.
TLDR
RNA-seq was used to identify critical genes and pathways associated with CMS in G. harknessii based CMS lines, implicating tapetum dysplasia may be a key reason for pollen abortion in CMS lines and identify two PPR genes which were highly up-regulated in restorer line. Expand
...
1
2
3
4
5
...