Topology and prediction of RNA pseudoknots

Abstract

MOTIVATION Several dynamic programming algorithms for predicting RNA structures with pseudoknots have been proposed that differ dramatically from one another in the classes of structures considered. RESULTS Here, we use the natural topological classification of RNA structures in terms of irreducible components that are embeddable in the surfaces of fixed… (More)
DOI: 10.1093/bioinformatics/btr090

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Cite this paper

@article{Reidys2011TopologyAP, title={Topology and prediction of RNA pseudoknots}, author={Christian M. Reidys and Fenix W. D. Huang and J\orgen Ellegaard Andersen and Robert C. Penner and Peter F. Stadler and Markus E. Nebel}, journal={Bioinformatics}, year={2011}, volume={27 8}, pages={1076-85} }