Topological analysis of metabolic networks based on petri net theory.

@article{ZevedeiOancea2011TopologicalAO,
  title={Topological analysis of metabolic networks based on petri net theory.},
  author={Ionela Zevedei-Oancea and Stefan Schuster},
  journal={Studies in health technology and informatics},
  year={2011},
  volume={162},
  pages={
          17-37
        }
}
Petri net concepts provide additional tools for the modelling of metabolic networks. Here, the similarities between the counterparts in traditional biochemical modelling and Petri net theory are discussed. For example the stoichiometry matrix of a metabolic network corresponds to the incidence matrix of the Petri net. The flux modes and conservation relations have the T-invariants, respectively, P-invariants as counterparts. We reveal the biological meaning of some notions specific to the Petri… CONTINUE READING

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