The phusion assembler.

@article{Mullikin2003ThePA,
  title={The phusion assembler.},
  author={James C. Mullikin and Zemin Ning},
  journal={Genome research},
  year={2003},
  volume={13 1},
  pages={81-90}
}
The Phusion assembler has assembled the mouse genome from the whole-genome shotgun (WGS) dataset collected by the Mouse Genome Sequencing Consortium, at ~7.5x sequence coverage, producing a high-quality draft assembly 2.6 gigabases in size, of which 90% of these bases are in 479 scaffolds. For the mouse genome, which is a large and repeat-rich genome, the input dataset was designed to include a high proportion of paired end sequences of various size selected inserts, from 2-200 kbp lengths… CONTINUE READING