The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree

@article{Murray2006TheLO,
  title={The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree},
  author={John Isaac Murray and Zhirong Bao and Thomas J. Boyle and Robert H. Waterston},
  journal={Nature Protocols},
  year={2006},
  volume={1},
  pages={1468-1476}
}
Lineage analysis of Caenorhabditis elegans is a powerful tool for characterizing developmental phenotypes and embryonic gene-expression patterns. We present a detailed protocol for the lineaging of embryos by computational analysis of 4D images of embryos that ubiquitously express histone–GFP (green fluorescent protein) fusion proteins through the 350 cell stage followed by manual editing. We describe how to optimize imaging settings for this purpose, the use of the lineage-extraction software… CONTINUE READING
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