The equilibrium partition function and base pair binding probabilities for RNA secondary structure

@article{McCaskill1990TheEP,
  title={The equilibrium partition function and base pair binding probabilities for RNA secondary structure},
  author={J. McCaskill},
  journal={Biopolymers},
  year={1990},
  volume={29}
}
A novel application of dynamic programming to the folding problem for RNA enables one to calculate the full equilibrium partition function for secondary structure and the probabilities of various substructures. In particular, both the partition function and the probabilities of all base pairs are computed by a recursive scheme of polynomial order N3 in the sequence length N. The temperature dependence of the partition function gives information about melting behavior for the secondary structure… Expand
Base Pairing Probabilities in a Complete HIV-1 RNA
Unified approach to partition functions of RNA secondary structures
  • R. Bundschuh
  • Physics, Medicine
  • Journal of mathematical biology
  • 2014
RNA multi-structure landscapes
Partition function and base pairing probabilities of RNA heterodimers
...
1
2
3
4
5
...

References

SHOWING 1-10 OF 39 REFERENCES
Method for predicting RNA secondary structure.
  • J. Pipas, J. Mcmahon
  • Chemistry, Medicine
  • Proceedings of the National Academy of Sciences of the United States of America
  • 1975
Improved free-energy parameters for predictions of RNA duplex stability.
  • S. Freier, R. Kierzek, +4 authors D. Turner
  • Chemistry, Medicine
  • Proceedings of the National Academy of Sciences of the United States of America
  • 1986
Computer-aided prediction of RNA secondary structures
Improved parameters for prediction of RNA structure.
...
1
2
3
4
...