The UCSC Genome Browser database: 2015 update

@inproceedings{Speir2015TheUG,
  title={The UCSC Genome Browser database: 2015 update},
  author={Matthew L. Speir and Ann S. Zweig and Kate R. Rosenbloom and Brian J. Raney and Benedict Paten and Parisa Nejad and Brian T. Lee and Katrina Learned and Donna Karolchik and Angie S. Hinrichs and Steve Heitner and Rachel A. Harte and Maximilian Haeussler and Luvina Guruvadoo and Pauline A. Fujita and Christopher Eisenhart and Mark Diekhans and Hiram Clawson and Jonathan Casper and Galt P. Barber and David Haussler and Robert M. Kuhn and W. James Kent},
  booktitle={Nucleic acids research},
  year={2015}
}
For the past 15 years, the UCSC Genome Browser (http://genome.ucsc.edu/) has served the international research community by offering an integrated platform for viewing and analyzing information from a large database of genome assemblies and their associated annotations. The UCSC Genome Browser has been under continuous development since its inception with new data sets and software features added frequently. Some release highlights of this year include new and updated genome browsers for… CONTINUE READING

Figures, Tables, and Topics from this paper.

Explore Further: Topics Discussed in This Paper

Citations

Publications citing this paper.
SHOWING 1-10 OF 473 CITATIONS, ESTIMATED 85% COVERAGE

Conserved and species-specific transcription factor co-binding patterns drive divergent gene regulation in human and mouse

VIEW 10 EXCERPTS
CITES BACKGROUND & METHODS
HIGHLY INFLUENCED

Putative contributions of the sex chromosome proteins SOX3 and SRY to neurodevelopmental disorders

VIEW 6 EXCERPTS
CITES METHODS
HIGHLY INFLUENCED

Evidence for a common evolutionary rate in metazoan transcriptional networks.

VIEW 6 EXCERPTS
CITES METHODS
HIGHLY INFLUENCED

Adaptive Landscape of Protein Variation in Human Exomes

VIEW 4 EXCERPTS
CITES BACKGROUND
HIGHLY INFLUENCED

Recently Evolved Tumor Suppressor Transcript TP73-AS1 Functions as Sponge of Human-Specific miR-941

VIEW 6 EXCERPTS
CITES BACKGROUND & METHODS
HIGHLY INFLUENCED

VarCards: an integrated genetic and clinical database for coding variants in the human genome

VIEW 11 EXCERPTS
CITES METHODS
HIGHLY INFLUENCED

FILTER CITATIONS BY YEAR

2015
2020

CITATION STATISTICS

  • 51 Highly Influenced Citations

  • Averaged 89 Citations per year from 2017 through 2019

References

Publications referenced by this paper.
SHOWING 1-10 OF 58 REFERENCES

Modernizing Reference Genome Assemblies

VIEW 10 EXCERPTS
HIGHLY INFLUENTIAL

The Ensembl genome database project

VIEW 11 EXCERPTS
HIGHLY INFLUENTIAL

RefSeq: an update on mammalian reference sequences

VIEW 5 EXCERPTS
HIGHLY INFLUENTIAL

ClinVar: public archive of relationships among sequence variation and human phenotype

VIEW 1 EXCERPT