The Global Genome Biodiversity Network (GGBN) Data Standard specification

Abstract

Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today's ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of genomic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard.Database URL: http://terms.tdwg.org/wiki/GGBN_Data_Standard.

DOI: 10.1093/database/baw125

4 Figures and Tables

Cite this paper

@inproceedings{Drge2016TheGG, title={The Global Genome Biodiversity Network (GGBN) Data Standard specification}, author={Gabriele Dr{\"{o}ge and Katharine Barker and Ole Seberg and Jonathan Coddington and Erica E. Benson and Walter G. Berendsohn and Boyke Bunk and Carol Butler and E. Margaret Casey and John Deck and Markus D{\"{o}ring and Paul Flemons and Birgit Gemeinholzer and Anton G{\"{u}ntsch and Tom Hollowell and Patricia Kelbert and Ivaylo Kostadinov and Renzo Kottmann and Rita T. Lawlor and Chris Lyal and Jacqueline Mackenzie-Dodds and Christopher Meyer and Daniel Mulcahy and Sara Y. Nussbeck and {\'E}amonn {\'O} Tuama and Thomas Orrell and Gitte Petersen and Tim Robertson and Carola S{\"{o}hngen and Jamie Whitacre and John Wieczorek and Pelin Yilmaz and Holger Zetzsche and Yong Zhang and Xin Zhou}, booktitle={Database}, year={2016} }