The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

  title={The Genome of Black Cottonwood, Populus trichocarpa (Torr. \& Gray)},
  author={Gerald A. Tuskan and Stephen P. DiFazio and Sandra Jansson and Joerg Bohlmann and Igor V. Grigoriev and Uffe Hellsten and Nik Putnam and Steven G. Ralph and Stephane Rombauts and Asaf A. Salamov and Jacquie E. Schein and Lieven Sterck and Andrea Aerts and Rupali R Bhalerao and Rishikesh P. Bhalerao and Damien Blaudez and Wout Boerjan and A. Brun and Adrian Brunner and Victor B Busov and Micaela Campbell and Jessica Carlson and Michel Chalot and Jarod Chapman and G.-L. Chen and Donald Cooper and Pedro M. Coutinho and Jean Couturier and Sarah F. Covert and Quentin C. B. Cronk and R. Cunningham and J. Davis and Sven Degroeve and Annabelle D{\'e}jardin and Claude W. dePamphilis and John C. Detter and Bill Dirks and Inna Dubchak and S{\'e}bastien Duplessis and Juergen Ehlting and Barbara Ellis and Karla Gendler and David M. Goodstein and Michael Gribskov and Jane Grimwood and Andrew T. Groover and Lee E. Gunter and Bjoern Hamberger and B. Heinze and Yrj{\"o} Helariutta and Bernard Henrissat and Dawn Holligan and Roger Holt and W H Huang and Nurul Islam-Faridi and S. J. M. Jones and Matthew W. Jones-Rhoades and Roger J{\o}rgensen and Cj Joshi and Jaakko Kangasj{\"a}rvi and J. Karlsson and Caren Kelleher and Russell Kirkpatrick and Matias Kirst and Annegret Kohler and Udaya C. Kalluri and Frank W. Larimer and James H. Leebens-Mack and Jean-Charles Lepl{\'e} and Philip F. LoCascio and Yigong Lou and Susan M. Lucas and Frank Martin and Barbara Montanini and Chiara Napoli and David R. Nelson and Cathy Nelson and Kaisa Nieminen and Ove Nilsson and V. Pereda and G. Peter and Romain Philippe and Gilles Pilate and Alexandre Poliakov and Jane Razumovskaya and P. Paul Richardson and Cécile Rinaldi and Kelvin Ritland and Pierre Rouz{\'e} and Dmitriy V. Ryaboy and Jeremy Schmutz and J. Schrader and Bo Segerman and H. Shin and A. Siddiqui and Fredrik H. Sterky and Astrid Y Terry and C-J. Tsai and Edward C. Uberbacher and Per Unneberg and Jorma Vahala and Kerr Wall and Susan R. Wessler and G. Yang and Tao Yin and Carl Douglas and Madison Marra and G{\"o}sta Sandberg and Yves van de Peer and Daniel S. Rokhsar},
  pages={1596 - 1604}
We report the draft genome of the black cottonwood tree, Populus trichocarpa. Integration of shotgun sequence assembly with genetic mapping enabled chromosome-scale reconstruction of the genome. More than 45,000 putative protein-coding genes were identified. Analysis of the assembled genome revealed a whole-genome duplication event; about 8000 pairs of duplicated genes from that event survived in the Populus genome. A second, older duplication event is indistinguishably coincident with the… 

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  • F. SterkyR. Bhalerao S. Jansson
  • Environmental Science, Biology
    Proceedings of the National Academy of Sciences of the United States of America
  • 2004
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