The GENCODE pseudogene resource

@inproceedings{Pei2012TheGP,
  title={The GENCODE pseudogene resource},
  author={Baikang Pei and Cristina Sisu and Adam Frankish and C{\'e}dric Howald and Lukas Habegger and Xinmeng Jasmine Mu and Rachel Harte and Suganthi Balasubramanian and Andrea Tanzer and Mark Diekhans and Alexandre Reymond and Tim J. P. Hubbard and Jennifer L. Harrow and Mark B Gerstein},
  booktitle={Genome Biology},
  year={2012}
}
Pseudogenes have long been considered as nonfunctional genomic sequences. However, recent evidence suggests that many of them might have some form of biological activity, and the possibility of functionality has increased interest in their accurate annotation and integration with functional genomics data. As part of the GENCODE annotation of the human genome, we present the first genome-wide pseudogene assignment for protein-coding genes, based on both large-scale manual annotation and in… CONTINUE READING
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International Nucleotide Sequence Database Collaboration: The International Nucleotide Sequence Database Collaboration

  • G Cochrane, I Karsch-Mizarchi, Y Nakamura
  • Nucleic Acids Res
  • 2011
Highly Influential
6 Excerpts

Experimental validation of the GENCODE annotation reveals that RNAseq transcriptome profiling pinpoints a large number of new linc genes but commonly misses rare transcripts

  • C Howald, A Tanzer, +14 authors A Reymond
  • Genome Res
  • 2012
3 Excerpts

Genome-wide analysis of the binding sites of more than 100 transcription-related factors defines different types of genomic regions with distinct biological properties

  • KY Yip, C Cheng, +8 authors MB Gerstein
  • Genome Res
  • 2012
2 Excerpts

Unsupervised segmentation of ENCODE chromatin data

  • M Hoffman, J Ernst, +6 authors W Stafford Noble
  • Genome Res
  • 2012
1 Excerpt

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