The Future of Rice Genomics: Sequencing the Collective Oryza Genome

  title={The Future of Rice Genomics: Sequencing the Collective Oryza Genome},
  author={Jose Luis Goicoechea and Jetty Siva S. Ammiraju and Pradeep Reddy Marri and Mingsheng Chen and Scott R. Jackson and Yeisoo Yu and Steve Rounsley and Rod A. Wing},
The main objectives of the “Oryza Map Alignment Project” (OMAP) are to characterize the rice genome from a comparative standpoint by establishing a genus-wide and genome-scale comparative framework from representative species. Here, we report our progress in the analyses of these datasets and emerging “comparative phylogenomics” insights into Oryza evolution at two different resolutions—chromosomal and sequence levels. We demonstrate the abundance and impact of structural variations (SV) on… CONTINUE READING

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Publications referenced by this paper.
Showing 1-10 of 35 references

Extensive sequence co-linearity in a 155 kb region surroundingHd1, A mayor domestication locus of rice, despite lability of the Hd1 Gene Itself

A Sanyal, JSS Ammiraju, +3 authors J Currie
Mol Biol Evol • 2010
View 4 Excerpts
Highly Influenced

Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.

The Plant journal : for cell and molecular biology • 2010
View 3 Excerpts

Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes.

Proceedings of the National Academy of Sciences of the United States of America • 2009

Structural comparative genomics of four African species of Oryza

JL Goicoechea
Ph.D. Dissertation. University of Arizona; • 2009
View 3 Excerpts

Dynamic evolution of oryza genomes.

The Plant cell • 2008
View 2 Excerpts

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