The Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life
@article{Raymond2006TheEO, title={The Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life}, author={Jason Raymond and Daniel Segr{\`e}}, journal={Science}, year={2006}, volume={311}, pages={1764 - 1767} }
The evolution of oxygenic photosynthesis and ensuing oxygenation of Earth's atmosphere represent a major transition in the history of life. Although many organisms retreated to anoxic environments, others evolved to use oxygen as a high–potential redox couple while concomitantly mitigating its toxicity. To understand the changes in biochemistry and enzymology that accompanied adaptation to O2, we integrated network analysis with information on enzyme evolution to infer how oxygen availability…
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References
SHOWING 1-10 OF 43 REFERENCES
The origin of atmospheric oxygen on Earth: The innovation of oxygenic photosynthesis
- BiologyProceedings of the National Academy of Sciences of the United States of America
- 2001
A thermodynamic analysis is presented showing that bicarbonate (formed by dissolution of CO2) is a more efficient alternative substrate than water for O2 production by oxygenic phototrophs, and it is proposed that bricarbonate was the thermodynamically preferred reductant before water in the evolution of oxygenic photosynthesis.
The geological consequences of evolution
- Environmental Science
- 2003
The example of oxygenic photosynthesis and the redox history of atmospheres and oceans illustrates the complex relationship between evolution and environmental change.
A cross species comparison of metabolic network functions.
- BiologyGenome informatics. International Conference on Genome Informatics
- 2005
A comparison between structural and functional similarities reveals that organisms with a similar structure do not necessarily show similar biological functions, indicating that this network function has been a target in the evolutionary past of the corresponding organisms.
Expanding Metabolic Networks: Scopes of Compounds, Robustness, and Evolution
- BiologyJournal of Molecular Evolution
- 2005
The outcome of network expansion is in general very robust against elimination of single or few reactions and it is hypothesized that the expansion process displays characteristics of the evolution of metabolism such as the temporal order of the emergence of metabolic pathways.
The Interface Between the Biological and Inorganic Worlds: Iron-Sulfur Metalloclusters
- ChemistryScience
- 2003
Complex iron-sulfur metalloclusters form the active sites of the enzymes that catalyze redox transformations of N2, CO, and H2, which are likely components of Earth's primordial atmosphere. Although…
When Did Photosynthesis Emerge on Earth?
- PhysicsScience
- 2000
Des Marais discusses recent geological and molecular biological evidence, such as the paper by Xiong et al., that photosynthesis emerged at least 2,800 million years ago.
Molecular evidence for the early evolution of photosynthesis.
- BiologyScience
- 2000
Phylogenetic analyses of multiple magnesium-tetrapyrrole biosynthesis genes using a combination of distance, maximum parsimony, and maximum likelihood methods indicate that heliobacteria are closest to the last common ancestor of all oxygenic photosynthetic lineages and that green sulfur bacteria and green nonsulfur bacteria are each other's closest relatives.
Structural analysis of expanding metabolic networks.
- BiologyGenome informatics. International Conference on Genome Informatics
- 2004
It is shown that reactions and compounds strongly differ in the generation in which they are attached to the network allowing conclusions for the temporal order of the acquisition during network evolution.
Evolving protein interaction networks through gene duplication.
- BiologyJournal of theoretical biology
- 2003
Hierarchical Organization of Modularity in Metabolic Networks
- BiologyScience
- 2002
It is shown that the metabolic networks of 43 distinct organisms are organized into many small, highly connected topologic modules that combine in a hierarchical manner into larger, less cohesive units, with their number and degree of clustering following a power law.