The Brain/MINDS 3D digital marmoset brain atlas

@article{Woodward2018TheB3,
  title={The Brain/MINDS 3D digital marmoset brain atlas},
  author={Alexander Woodward and Tsutomu Hashikawa and Masahide Maeda and Takaaki Kaneko and Keigo Hikishima and Atsushi Iriki and Hideyuki Okano and Yoko Yamaguchi},
  journal={Scientific Data},
  year={2018},
  volume={5}
}
We present a new 3D digital brain atlas of the non-human primate, common marmoset monkey (Callithrix jacchus), with MRI and coregistered Nissl histology data. To the best of our knowledge this is the first comprehensive digital 3D brain atlas of the common marmoset having normalized multi-modal data, cortical and sub-cortical segmentation, and in a common file format (NIfTI). The atlas can be registered to new data, is useful for connectomics, functional studies, simulation and as a reference… 
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58 Citations
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58 Citations

The NanoZoomer Connectomics Pipeline for Tracer Injection Studies of the Marmoset Brain

Results show the pipeline can successfully process and normalize tracer injection experiments into a common space, making it suitable for large-scale connectomics studies with a focus on the cerebral cortex.

Marmoset Brain Mapping V3: Population multi-modal standard volumetric and surface-based templates

Histology‐Based Average Template of the Marmoset Cortex With Probabilistic Localization of Cytoarchitectural Areas

Histology-based average template of the marmoset cortex with probabilistic localization of cytoarchitectural areas

A new open access template of the marmoset cortex (the Nencki–Monash, or NM template), representing a morphological average of 20 brains of young adult individuals, obtained by 3D reconstructions generated from Nissl-stained serial sections is reported on.

The NanoZoomer artificial intelligence connectomics pipeline for tracer injection studies of the marmoset brain

Results show the connectomics pipeline can successfully process and normalize tracer injection experiments into a common space, making it suitable for large-scale connectomics studies with a focus on the cerebral cortex.

MarmoNet: a pipeline for automated projection mapping of the common marmoset brain from whole-brain serial two-photon tomography

The current state of the tracer signal analysis part of the pipeline is introduced, which incorporates state-of-the-art machine learning techniques based on artificial convolutional neural networks (CNN) and image registration techniques to extract and map all relevant information in a robust manner.

A 3D population-based brain atlas of the mouse lemur primate with examples of applications in aging studies and comparative anatomy

Multimodal Cross-registration and Quantification of Metric Distortions in Whole Brain Histology of Marmoset using Diffeomorphic Mappings

This is the first systematic quantification of the local metric distortions associated with whole-brain histological processing, and it is expected that the results will generalize to other species.

Multimodal cross‐registration and quantification of metric distortions in marmoset whole brain histology using diffeomorphic mappings

This is the first systematic quantification of local metric distortions associated with whole‐brain histological processing, and it is expected that the results will generalize to other species.

Anatomical variability, multi-modal coordinate systems, and precision targeting in the marmoset brain

A non-invasive multi-modal neuroimaging-based targeting pipeline is developed, which accounts for intersubject anatomical variability in cranial and cortical landmarks in marmosets, and demonstrates substantial intersubject variability inmarmoset brain and cranial landmarks.
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