TSSPlant: a new tool for prediction of plant Pol II promoters

  title={TSSPlant: a new tool for prediction of plant Pol II promoters},
  author={Ilham A. Shahmuradov and Ramzan Kh. Umarov and Victor V. Solovyev},
  booktitle={Nucleic acids research},
Our current knowledge of eukaryotic promoters indicates their complex architecture that is often composed of numerous functional motifs. Most of known promoters include multiple and in some cases mutually exclusive transcription start sites (TSSs). Moreover, TSS selection depends on cell/tissue, development stage and environmental conditions. Such complex promoter structures make their computational identification notoriously difficult. Here, we present TSSPlant, a novel tool that predicts both… CONTINUE READING

From This Paper

Figures, tables, and topics from this paper.


Publications citing this paper.
Showing 1-7 of 7 extracted citations


Publications referenced by this paper.
Showing 1-10 of 48 references

Identification and validation of promoters and cis-acting regulatory elements.

Plant science : an international journal of experimental plant biology • 2014

ppdb: plant promoter database version 3.0

Nucleic Acids Research • 2014
View 1 Excerpt