TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

  title={TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing},
  author={Heiko A. Schmidt and Korbinian Strimmer and Martin Vingron and Arndt von Haeseler},
  volume={18 3},
SUMMARY TREE-PUZZLE is a program package for quartet-based maximum-likelihood phylogenetic analysis (formerly PUZZLE, Strimmer and von Haeseler, Mol. Biol. Evol., 13, 964-969, 1996) that provides methods for reconstruction, comparison, and testing of trees and models on DNA as well as protein sequences. To reduce waiting time for larger datasets the tree reconstruction part of the software has been parallelized using message passing that runs on clusters of workstations as well as parallel… CONTINUE READING
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