TRANSIT - A Software Tool for Himar1 TnSeq Analysis

@inproceedings{DeJesus2015TRANSITA,
  title={TRANSIT - A Software Tool for Himar1 TnSeq Analysis},
  author={Michael A. DeJesus and Chaitra Ambadipudi and Richard Baker and Christopher M. Sassetti and Thomas R. Ioerger},
  booktitle={PLoS Computational Biology},
  year={2015}
}
TnSeq has become a popular technique for determining the essentiality of genomic regions in bacterial organisms. Several methods have been developed to analyze the wealth of data that has been obtained through TnSeq experiments. We developed a tool for analyzing Himar1 TnSeq data called TRANSIT. TRANSIT provides a graphical interface to three different statistical methods for analyzing TnSeq data. These methods cover a variety of approaches capable of identifying essential genes in individual… CONTINUE READING
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