THE AMPHIBIAN TREE OF LIFE

@inproceedings{Frost2006THEAT,
  title={THE AMPHIBIAN TREE OF LIFE},
  author={Darrel R. Frost and Taran Grant and Juli{\'a}n Faivovich and Raoul H. Bain and Alexander Haas and C{\'e}lio Fernando Baptista Haddad and Rafael O de S{\'a} and Alan Channing and M. Wilkinson and Stephen C. Donnellan and Christopher J Raxworthy and Jonathan A. Campbell and Boris L. Blotto and Paul E. Moler and Robert C. Drewes and Ronald A. Nussbaum and John D. Lynch and David M. Green and Ward C. Wheeler},
  year={2006}
}
Abstract The evidentiary basis of the currently accepted classification of living amphibians is discussed and shown not to warrant the degree of authority conferred on it by use and tradition. A new taxonomy of living amphibians is proposed to correct the deficiencies of the old one. This new taxonomy is based on the largest phylogenetic analysis of living Amphibia so far accomplished. We combined the comparative anatomical character evidence of Haas (2003) with DNA sequences from the… 
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References

SHOWING 1-10 OF 484 REFERENCES
On the origin of and phylogenetic relationships among living amphibians
  • R. Zardoya, A. Meyer
  • Biology
    Proceedings of the National Academy of Sciences of the United States of America
  • 2001
TLDR
Strong support of the Batrachia hypothesis from both molecule- and morphology-based studies provides a robust phylogenetic framework that will be helpful to comparative studies among the three living orders of amphibians and will permit better understanding of the considerably divergent vertebral, brain, and digit developmental patterns found in frogs and salamanders.
Mitochondrial evidence on the phylogenetic position of caecilians (Amphibia: Gymnophiona).
TLDR
The complete nucleotide sequence of the mitochondrial genome of the caecilian Typhlonectes natans (Gymnophiona, Amphibia) was determined and was used to assess the phylogenetic position of caecilians and to gain insights into the origin of living amphibians.
Evolutionary relationships of the coelacanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene.
  • R. Zardoya, A. Meyer
  • Biology
    Proceedings of the National Academy of Sciences of the United States of America
  • 1996
TLDR
This molecular phylogeny aids in the reconstruction of morphological evolutionary steps by providing a framework; however, only paleontological evidence can determine the sequence of Morphological acquisitions that allowed lobe-finned fishes to colonize land.
Initial Diversification of Living Amphibians Predated the Breakup of Pangaea
TLDR
A robust molecular phylogeny based on the nuclear RAG1 gene as well as results from a variety of alternative independent molecular clock calibrations suggest that the origin and early divergence of the three living amphibian orders dates back to the Palaeozoic or early Mesozoic, before the breakup of Pangaea, and soon after the divergence from lobe‐finned fishes.
A Molecular Perspective on Lissamphibian Phylogeny
TLDR
Relationships among the three extant orders of the Class Amphibia were examined using new DNA sequence data from the mitochondrial 12S ribosomal RNA gene, supporting the monophyly of the Lissamphibia and the monophilia of each of the three orders.
Phylogenetic relationships of amphibian families inferred from DNA sequences of mitochondrial 12S and 16S ribosomal RNA genes.
TLDR
Phylogenetic analyses of sequenced data support the monophyly of each of the three amphibian orders and an analysis using the four-cluster method cannot discriminate significantly between all three possible unrooted trees involving the three orders of amphibians and an outgroup.
Molecular evidence for the early history of living amphibians.
TLDR
Evidence from the DNA sequences of four mitochondrial genes that challenges the conventional hypothesis and supports a salamander-caecilian relationship is presented and suggests a more recent (Mesozoic) origin for salamanders and caecilians directly linked to the initial breakup of the supercontinent Pangaea.
Complete mitochondrial genome suggests diapsid affinities of turtles.
  • R. Zardoya, A. Meyer
  • Biology
    Proceedings of the National Academy of Sciences of the United States of America
  • 1998
TLDR
The results challenge the classic view of turtles as the only survivors of primary anapsid reptiles and imply that turtles might have secondarily lost their skull fenestration.
Tetrapod phylogeny, amphibian origins, and the definition of the name tetrapoda.
TLDR
The most detailed, computer-generated phylogeny of early amphibians has been published recently, but the views Anderson expressed about the polyphyletic origin of extant amphibians and about the application of phylogenetic nomenclature are problematic.
AMPHIBIAN RELATIONSHIPS: PHYLOGENETIC ANALYSIS OF MORPHOLOGY AND MOLECULES
TLDR
The results of phylogenetic analyses of Amphibia, Anura, Caudata, and Gymnophiona from morpho- logical and molecular studies are compared, based on papers published in the symposium "Am- phibian relationships: Phylogenetic analysis of morphology and molecules".
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