Structure prediction for CASP8 with all-atom refinement using Rosetta.

  title={Structure prediction for CASP8 with all-atom refinement using Rosetta.},
  author={Srivatsan Raman and Robert Vernon and James Thompson and Michael D Tyka and Ruslan I Sadreyev and Jimin Pei and David Kim and Elizabeth S Kellogg and Frank DiMaio and Oliver Lange and Lisa Kinch and Will Sheffler and Bong-Hyun Kim and Rhiju Das and Nick V. Grishin and David Baker},
  volume={77 Suppl 9},
We describe predictions made using the Rosetta structure prediction methodology for the Eighth Critical Assessment of Techniques for Protein Structure Prediction. Aggressive sampling and all-atom refinement were carried out for nearly all targets. A combination of alignment methodologies was used to generate starting models from a range of templates, and the models were then subjected to Rosetta all atom refinement. For the 64 domains with readily identified templates, the best submitted model… CONTINUE READING
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