Stochastic Semantics of Signaling as a Composition of Agent-view Automata

Abstract

In this paper we present a formalism based on stochastic automata to describe the stochastic dynamics of signal transduction networks that are specified by rule-sets. Our formalism gives a modular description of the underlying stochastic process, in the sense that it is a composition of smaller units – agent-views. The view of an agent is an automaton that… (More)
DOI: 10.1016/j.entcs.2011.04.002

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