Statistical-mechanical lattice models for protein-DNA binding in chromatin.

@article{Teif2010StatisticalmechanicalLM,
  title={Statistical-mechanical lattice models for protein-DNA binding in chromatin.},
  author={V. B. Teif and K. Rippe},
  journal={Journal of physics. Condensed matter : an Institute of Physics journal},
  year={2010},
  volume={22 41},
  pages={
          414105
        }
}
  • V. B. Teif, K. Rippe
  • Published 2010
  • Chemistry, Medicine, Physics, Biology
  • Journal of physics. Condensed matter : an Institute of Physics journal
  • Statistical-mechanical lattice models for protein-DNA binding are well established as a method to describe complex ligand binding equilibria measured in vitro with purified DNA and protein components. Recently, a new field of applications has opened up for this approach since it has become possible to experimentally quantify genome-wide protein occupancies in relation to the DNA sequence. In particular, the organization of the eukaryotic genome by histone proteins into a nucleoprotein complex… CONTINUE READING
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    References

    SHOWING 1-10 OF 188 REFERENCES
    A lattice model for transcription factor access to nucleosomal DNA.
    • 34
    • PDF
    A statistical-mechanical model for regulation of long-range chromatin structure and gene expression.
    • H. Ishii
    • Biology, Medicine
    • Journal of theoretical biology
    • 2000
    • 8
    A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites.
    • 232
    • PDF
    Measurement of histone-DNA interaction free energy in nucleosomes.
    • 126
    • Highly Influential
    A genomic code for nucleosome positioning
    • 1,440
    • Highly Influential
    • PDF
    The DNA-encoded nucleosome organization of a eukaryotic genome
    • 1,132
    • PDF