Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

@inproceedings{Blahnik2010SoleSearchAI,
  title={Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data},
  author={Kimberly R. Blahnik and Lei Dou and Henriette O’Geen and Timothy M. McPhillips and Xiaoqin Xu and Alina R. Cao and Sushma Iyengar and Charles M. Nicolet and Bertram Lud{\"a}scher and Ian Korf and Peggy J. Farnham},
  booktitle={Nucleic acids research},
  year={2010}
}
Next-generation sequencing is revolutionizing the identification of transcription factor binding sites throughout the human genome. However, the bioinformatics analysis of large datasets collected using chromatin immunoprecipitation and high-throughput sequencing is often a roadblock that impedes researchers in their attempts to gain biological insights from their experiments. We have developed integrated peak-calling and analysis software (Sole-Search) which is available through a user… CONTINUE READING

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