Software for systems biology: from tools to integrated platforms

@article{Ghosh2011SoftwareFS,
  title={Software for systems biology: from tools to integrated platforms},
  author={Samik Ghosh and Y. Matsuoka and Y. Asai and Kun-Yi Hsin and H. Kitano},
  journal={Nature Reviews Genetics},
  year={2011},
  volume={12},
  pages={821-832}
}
Understanding complex biological systems requires extensive support from software tools. Such tools are needed at each step of a systems biology computational workflow, which typically consists of data handling, network inference, deep curation, dynamical simulation and model analysis. In addition, there are now efforts to develop integrated software platforms, so that tools that are used at different stages of the workflow and by different researchers can easily be used together. This Review… Expand
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