Corpus ID: 204878872

Software for Systematics and Evolution

@inproceedings{Daniel2016SoftwareFS,
  title={Software for Systematics and Evolution},
  author={Daniel and L. and Ayres and Michael and P. and Cummings and G. Baele and Aaron and E. and Darling and Paul and •{\~o} and Lewis and David and SWOFFORD and John and HUELSENBECK and P. Lemey and A. Rambaut and Marc and A. and SUCHARD},
  year={2016}
}
  • Daniel, L., +19 authors SUCHARD
  • Published 2016
—Programs for Bayesian inference of phylogeny currently implement a unique and fixed suite of models. Consequently, users of these software packages are simultaneously forced to use a number of programs for a given study, while also lacking the freedom to explore models that have not been implemented by the developers of those programs. We developed a new open-source software package, RevBayes, to address these problems. RevBayes is entirely based on probabilistic graphical models, a powerful… Expand

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References

SHOWING 1-10 OF 237 REFERENCES
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
  • 282
  • PDF
Probabilistic Graphical Model Representation in Phylogenetics
  • 59
  • PDF
Phycas: software for Bayesian phylogenetic analysis.
  • 23
  • PDF
BEAST: Bayesian evolutionary analysis by sampling trees
  • 10,686
  • PDF
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
  • 3,663
  • PDF
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
  • 12,682
  • Highly Influential
  • PDF
bModelTest: Bayesian phylogenetic site model averaging and model comparison
  • 263
  • PDF
Many-core algorithms for statistical phylogenetics
  • 348
  • PDF
Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
  • 406
  • PDF
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