Smoldyn on Graphics Processing Units: Massively Parallel Brownian Dynamics Simulations

@article{Dematt2012SmoldynOG,
  title={Smoldyn on Graphics Processing Units: Massively Parallel Brownian Dynamics Simulations},
  author={Lorenzo Dematt{\'e}},
  journal={IEEE/ACM Transactions on Computational Biology and Bioinformatics},
  year={2012},
  volume={9},
  pages={655-667}
}
Space is a very important aspect in the simulation of biochemical systems; recently, the need for simulation algorithms able to cope with space is becoming more and more compelling. Complex and detailed models of biochemical systems need to deal with the movement of single molecules and particles, taking into consideration localized fluctuations, transportation phenomena, and diffusion. A common drawback of spatial models lies in their complexity: models can become very large, and their… CONTINUE READING
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