SledgeHMMER: a web server for batch searching the Pfam database

  title={SledgeHMMER: a web server for batch searching the Pfam database},
  author={Giridhar Chukkapalli and Chittibabu Guda and Shankar Subramaniam},
  journal={Nucleic acids research},
  volume={32 Web Server issue},
The SledgeHMMER web server is intended for genome-scale searching of the Pfam database without having to install this database and the HMMER software locally. The server implements a parallelized version of hmmpfam, the program used for searching the Pfam HMM database. Pfam search results have been calculated for the entire Swiss-Prot and TrEmbl database sequences (approximately 1.2 million) on 256 processors of IA64-based teragrid machines. The Pfam database can be searched in local, glocal or… CONTINUE READING
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