SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data

@inproceedings{Deng2011SeqGeneAC,
  title={SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data},
  author={Xutao Deng},
  booktitle={BMC Bioinformatics},
  year={2011}
}
The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide range of analysis tasks. SeqGene, a new data mining tool, supports mutation detection and annotation, dbSNP and 1000 Genome data integration, RNA-Seq expression quantification, mutation and coverage visualization, allele specific expression (ASE), differentially expressed genes (DEGs) identification, copy number variation (CNV… CONTINUE READING
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