Separating Topological Noise from Features Using Persistent Entropy
@article{Atienza2016SeparatingTN, title={Separating Topological Noise from Features Using Persistent Entropy}, author={Nieves Atienza and Roc{\'i}o Gonz{\'a}lez-D{\'i}az and Matteo Rucco}, journal={ArXiv}, year={2016}, volume={abs/1605.02885} }
In this paper, we derive a simple method for separating topological noise from topological features using a novel measure for comparing persistence barcodes called persistent entropy.
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References
SHOWING 1-10 OF 18 REFERENCES
Statistical topological data analysis using persistence landscapes
- MathematicsJ. Mach. Learn. Res.
- 2015
A new topological summary for data that is easy to combine with tools from statistics and machine learning and obeys a strong law of large numbers and a central limit theorem is defined.
A new topological entropy-based approach for measuring similarities among piecewise linear functions
- Computer ScienceSignal Process.
- 2017
Algebraic Topology
- Mathematics
The focus of this paper is a proof of the Nielsen-Schreier Theorem, stating that every subgroup of a free group is free, using tools from algebraic topology.
Elements of algebraic topology
- Mathematics
- 1984
Elements of Algebraic Topology provides the most concrete approach to the subject. With coverage of homology and cohomology theory, universal coefficient theorems, Kunneth theorem, duality in…
Simplicial Models and Topological Inference in Biological Systems
- Computer Science, MathematicsDiscrete and Topological Models in Molecular Biology
- 2014
This article begins with the combinatorics and geometry of simplicial complexes and outline the standard techniques for imposing filtered simplicial structures on a general class of datasets, and computes topological statistics of the original data via the algebraic theory of (persistent) homology.
Characterisation of the Idiotypic Immune Network Through Persistent Entropy
- Computer ScienceECCS
- 2014
The present work obtained numerical evidences that approximate von Neumann entropy and persistent entropy detect the activation of the immune system and allows also to identify the antibodies involved in the immune memory.
jHoles: A Tool for Understanding Biological Complex Networks via Clique Weight Rank Persistent Homology
- Computer ScienceElectron. Notes Theor. Comput. Sci.
- 2014
Computational Topology - an Introduction
- Computer Science
- 2009
This book is ideal for teaching a graduate or advanced undergraduate course in computational topology, as it develops all the background of both the mathematical and algorithmic aspects of the subject from first principles.
Discrete and Topological Models in Molecular Biology
- BiologyNatural Computing Series
- 2014
How contemporary models from discrete mathematics in domains such as algebra, combinatorics, and graph and knot theories can provide perspective on biomolecular problems ranging from data analysis, molecular and gene arrangements and structures, and knotted DNA embeddings via spatial graph models to the dynamics and kinetics of molecular interactions is explored.