Seed-based IntaRNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1

@inproceedings{Richter2010SeedbasedIP,
  title={Seed-based IntaRNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1},
  author={Andreas S. Richter and Christian Schleberger and Rolf Backofen and Claudia Steglich},
  booktitle={Bioinformatics},
  year={2010}
}
MOTIVATION Prochlorococcus possesses the smallest genome of all sequenced photoautotrophs. Although the number of regulatory proteins in the genome is very small, the relative number of small regulatory RNAs is comparable with that of other bacteria. The compact genome size of Prochlorococcus offers an ideal system to search for targets of small RNAs (sRNAs) and to refine existing target prediction algorithms. RESULTS Target predictions for the cyanobacterial sRNA Yfr1 were carried out with… CONTINUE READING

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